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Publications for: Zenaida V. Magbanua
Peer-Reviewed Journals
Magbanua, Z. V., Arick, M., II, Buza, T., Hsu, C. Y., Showmaker, K. C., Chouvarine, P., Deng, P., Peterson, D. G., & Lu, S. (2014). Transcriptomic Dissection of the Rice - Burkholderia glumae Interaction. BMC Genomics. 15, 755. DOI:10.1186/1471-2164-15-755. [Abstract]
Magbanua, Z. V., Ozkan, S., Bartlett, B. D., Chouvarine, P., Saski, C. A., Liston, A. I., Cronn, R. C., Nelson, C. D., & Peterson, D. G. (2011). Adventures in the Enormous: A 1.8 Million Clone BAC Library for the 21.7 Gb Genome of Loblolly Pine. PLoS ONE. 6, e16214. [Abstract] [Document]
Morse, A. M., Peterson, D. G., Islam-Faridi, M. N., Smith, K. E., Magbanua, Z. V., Garcia, S. A., Kubisiak, T. L., Amerson, H. V., Carlson, J. E., & Nelson, C. D. (2009). Evolution of Genome Size and Complexity in Pinus. PLoS ONE. 4(2), e4332. [Abstract] [Document]
Saha, S., Bridges, S., Magbanua, Z. V., & Peterson, D. G. (2008). Discovering Relationships Among Dispersed Repeats Using Spatial Association Rule Mining. BMC Bioinformatics. 9(Suppl 10), O4. [Document]
Saha, S., Bridges, S., Magbanua, Z. V., & Peterson, D. G. (2008). Empirical Comparison of Ab Initio Repeat Finding Programs. Nucleic Acids Research. 36(7), 2284-2294. DOI:10.1093/nar/gkn064. [Abstract] [Document] [Document Site]
Saha, S., Bridges, S., Magbanua, Z. V., & Peterson, D. G. (2008). Computational Approaches and Tools Used in Identification of Dispersed Repetitive DNA Sequences. Tropical Plant Biology. Springer New York. 1(1), 85-96. [Abstract] [Document]
Magbanua, Z. V., DeMoraes, C. M., Brooks, T. D., Williams, W. P., & Luthe, D. S. (2007). Is Catalase Activity One of the Factors Associated with Maize Resistance to Aspergillus Flavus? Molecular Plant-Microbe Interactions. 20, 697-706. [Abstract] [Document]
Peer-Reviewed Conference Abstracts
Luthe, D. S., Spangler, L. M., Magbanua, Z. V., Pechanova, O., Bridges, S., & Williams, W. P. (2007). Proteomic Analysis to Understand Pathways of Resistance to Aspergillus Flavus Infection and Aflatoxin Accumulation in Maize. V Brazilian Meeting of Chemical Ecology. Londrina, Brazil.
Peer-Reviewed Conference Posters
Saha, S., Bridges, S., Magbanua, Z. V., & Peterson, D. G. (2009). Discovering Spatially Related Repeats in Assembled Genomes Using Association Rule Mining. Midsouth Computational Biology and Bioinformatics Society (MCBIOS) Annual Meeting. Mississippi State University, Starkville, MS.
Saha, S., Bridges, S., Magbanua, Z. V., & Peterson, D. G. (2008). Data Mining of Spatial Relationships Among Dispersed Repetitive Regions. 6th Annual Graduate Student Association Research Symposium. Mississippi State University.
Non-Refereed Conference Abstracts
Saha, S., Bridges, S., Magbanua, Z. V., & Peterson, D. G. (2007). Empirical Evaluation of Ab Initio Repeat Finders. MCBIOS (MidSouth Computational Biology and Bioinformatics Society). New Orleans, LA.
Non-Refereed Conference Posters
Sanders, W. S., Ganji, S., Arnold, J. P., Arick, M., II, Showmaker, K. C., Bartlett, B. D., Cooksey, A., Watts, J., Knudstrup, S., Magbanua, Z. V., Peterson, D. G., & Wubben, M. J. (2014). Assembly, Annotation, and Proteogenomic Mapping of Rotylenchulus reniformis. Plant and Animal Genome XXII. San Diego, CA. [Abstract] [Document] [Document Site]
Ganji, S., Sanders, W. S., Stokes, J. V., Showmaker, K. C., Bartlett, B., Wang, H, Wubben, M., McCarthy, F.M., Magbanua, Z. V., & Peterson, D. G. (2013). The Genome of Reniform Nematode, Rotylenchulus reniformis. MCBIOS 2013. University of Missouri, Columbia, MO. [Abstract] [Document] [Document Site]
Showmaker, K. C., Ganji, S., Arick, M., II, Sanders, W. S., Magbanua, Z. V., Wubben, M. J., & Peterson, D. G. (2013). De Novo Transcriptome Assembly of the Plant-Parasitic Nematode Rotylenchulus reniformis. MCBIOS 2013. University of Missouri, Columbia, MO. [Abstract] [Document Site]
Sanders, W. S., Showmaker, K. C., Bartlett, B. D., Wang, H, Ganji, S., Wubben, M., McCarthy, F.M., Magbanua, Z. V., & Peterson, D. G. (2012). Assembling and Annotating the Genome of a Plant Parasitic Nematode, Rotylenchulus reniformis, with Sequences Obtained Using 2Nd Generation Sequencing Technologies. MCBIOS 2012. University of Mississippi. [Abstract]
Showmaker, K. C., Sanders, W. S., Bartlett, B., Wang, H, Ganji, S., Wubben, M. J., McCarthy, F.M., Magbanua, Z. V., & Peterson, D. G. (2012). Sequencing and Analysis of the Rotylenchulus reniformis Transcriptome. Plant and Animal Genome XX. San Diego, CA. [Abstract] [Document Site]
Sanders, W. S., Showmaker, K. C., Bartlett, B. D., Wang, H, Ganji, S., Wubben, M., McCarthy, F.M., Magbanua, Z. V., & Peterson, D. G. (2012). The Rotylenchulus reniformis Genome: Sequencing, Assembly, and Annotation. Plant and Animal Genomes XX. San Diego, CA. [Abstract] [Document]
Kumar, P. K. R., Li, P., Wimalanathan, K., Liu, L., Ji, G., Magbanua, Z. V., Lorenz, W. W., Nairn, C. J., Dean, J. F. D., Peterson, D. G., & Liang, C. (2011). The Pinus Taeda BAC Browser. Plant & Animal Genomes XIX Conference. San Diego, CA. [Abstract] [Document]
Islam-Faridi, N., Magbanua, Z. V., Majid, M. A., Butnor, J. R., Peterson, D. G., & Nelson, C. D. (2010). Chromosomal Distribution Of Pine Repetitive DNA Sequences. Plant & Animal Genomes XVIII Conference. San Diego, CA. [Abstract] [Document]